Download MendeleyStructure of probable two-component system response regulator/GGDEF domain protein
Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C.To be published.
3LUF
Structure of probable two-component system response regulator/GGDEF domain protein
- PDB DOI: https://doi.org/10.2210/pdb3LUF/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Aeromonas salmonicida subsp. salmonicida A449
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-02-17 Released: 2010-03-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.226
- R-Value Work: 0.187
- R-Value Observed: 0.189
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Two-component system response regulator/GGDEF domain protein | 259 | Aeromonas salmonicida subsp. salmonicida A449 | Mutation(s): 0 Gene Names: ASA_2441 |  | |
UniProt | |||||
Find proteins for A4SNL2 (Aeromonas salmonicida (strain A449)) Explore A4SNL2 Go to UniProtKB: A4SNL2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A4SNL2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DMS Query on DMS | E [auth A], H [auth B], I [auth B] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth A], D [auth A], F [auth B], G [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.226
- R-Value Work: 0.187
- R-Value Observed: 0.189
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.195 | α = 75.39 |
| b = 53.699 | β = 80.99 |
| c = 57.887 | γ = 77.41 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXE | model building |
| SHELXD | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2010-03-02 Deposition Author(s): Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-03-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
