3LEP

Human Aldose Reductase mutant T113C in complex with IDD388

Structural Biology Knowledgebase: 3LEP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.99 Å
  • R-Value Free: 0.130
  • R-Value Work: 0.109

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3LEP

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 37332.75

Macromolecule Entities
Molecule Chains Length Organism Details
Aldose reductase A 316 Homo sapiens EC#: 1.1.1.21 IUBMB
Mutation: L4I, T113C
Gene Name(s): AKR1B1 Gene View ALDR1

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
388
Query on 388

A (2-{[(4-BROMO-2-FLUOROBENZYL)AMINO]CARBONYL}- 5-CHLOROPHENOXY)ACETIC ACID
IDD388 (Synonym)
C16 H12 Br Cl F N O4
ZLIGBZRXAQNUFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BR
Query on BR

A BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
388 IC50: 400 nM (99) BindingDB
ΔG: -46.7 - -38 kJ/mol (99) BindingDB
-TΔS: 19.4 - 28.8 kJ/mol (99) BindingDB

Kd: 110 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.99 Å
  • R-Value Free: 0.130
  • R-Value Work: 0.109
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 49.27 α = 90.00
b = 66.92 β = 92.26
c = 47.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-01-15
  • Released Date: 2010-12-15
  • Deposition author(s): Koch, C., Heine, A., Klebe, G.

Revision History

  • 2011-08-24
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4