Selection of a novel highly specific TNFalpha antagonist: Insight from the crystal structure of the antagonist-TNFalpha complex
Primary Citation
  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 31836.41
    Molecule: TNFalpha
    Polymer: 1 Type: protein Length: 134
    Chains: C
    Organism: Homo sapiens
    Gene Names: TNA Gene View for CLEC3B
    UniProtKB: Search PDB | P05452   Protein Feature View
    Molecule: Tumor necrosis factor, soluble form
    Polymer: 2 Type: protein Length: 149
    Chains: T
    Fragment: UNP residues 85-233
    Organism: Homo sapiens
    Gene Names: TNFA TNFSF2 Gene View for TNF
    UniProtKB: Search PDB | P01375   Protein Feature View
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG Mg
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Byla, P.,  Andersen, M.H.,  Thogersen, H.C.,  Gad, H.H.,  Hartmann, R.

    Deposition:   2010-01-05
    Release:   2010-02-23
    Last Modified (REVDAT):   2014-02-26
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    Biological assembly
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.10
    R-Value: 0.175 (obs.)
    R-Free: 0.217
    Space Group: P 63 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 83.90 α = 90.00 
    b = 83.90 β = 90.00 
    c = 149.17 γ = 120.00