3L5D

Structure of BACE Bound to SCH723873


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 3L5D

Classification: HYDROLASE

Total Structure Weight: 93725.15

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A, B 414 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BDV
Query on BDV

A, B 1-butyl-3-(4-{[(2Z,4R)-2-imino-4-methyl-4- (2-methylpropyl)-5-oxoimidazolidin-1-yl]methyl}benzyl)urea
C21 H33 N5 O2
VPGRKPRUHRVZER-OAQYLSRUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TAR
Query on TAR

A, B D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BDV N/A in BindingDB
IC50: 78000 nM  BindingMOAD
IC50: 78000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 86.23 α = 90.00
b = 89.22 β = 90.00
c = 130.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-21
  • Released Date: 2010-02-16
  • Deposition author(s): Strickland, C., Zhu, Z.

Revision History

  • Version 1_0: 2010-02-16

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance