3KQR
The structure of serum amyloid p component bound to phosphoethanolamine
- PDB DOI: https://doi.org/10.2210/pdb3KQR/pdb
- Classification: GLYCOPROTEIN
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 2009-11-17 Released: 2010-12-08 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.161 
- R-Value Work: 0.141 
- R-Value Observed: 0.142 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Serum amyloid P-component | 204 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P02743 (Homo sapiens) Explore P02743  Go to UniProtKB:  P02743 | |||||
PHAROS:  P02743 GTEx:  ENSG00000132703  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02743 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | H [auth A], L [auth B], Q [auth C], T [auth D], X [auth E] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
OPE Query on OPE | F [auth A], J [auth B], N [auth C], R [auth D], V [auth E] | PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER C2 H8 N O4 P SUHOOTKUPISOBE-UHFFFAOYSA-N | |||
CA Query on CA | G [auth A] I [auth A] K [auth B] M [auth B] O [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.161 
- R-Value Work: 0.141 
- R-Value Observed: 0.142 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 94.86 | α = 90 |
b = 69.86 | β = 96.95 |
c = 102.27 | γ = 90 |
Software Name | Purpose |
---|---|
SCALA | data processing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
ADSC | data collection |
MOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2010-12-08  Deposition Author(s): Mikolajek, H., Kolstoe, S.E., Wood, S.P., Pepys, M.B.
Revision History (Full details and data files)
- Version 1.0: 2010-12-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary