3HS0

Cobra Venom Factor (CVF) in complex with human factor B

Structural Biology Knowledgebase: 3HS0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3HS0

Classification: IMMUNE SYSTEM

Total Structure Weight: 452142.49

Macromolecule Entities
Molecule Chains Length Organism Details
Cobra venom factor A, F 627 Naja kaouthia Fragment: residues 23-649
Gene Name(s):
Cobra venom factor B, G 252 Naja kaouthia Fragment: residues 733-984
Gene Name(s):
Cobra venom factor C, H 379 Naja kaouthia Fragment: residues 1264-1642
Gene Name(s):
Complement factor B D, I 741 Homo sapiens EC#: 3.4.21.47 IUBMB
Fragment: residues 26-764
Mutation: D254G, N260D
Gene Name(s): CFB Gene View BF BFD

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C, D, F, H, I N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, D, F, I MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.189
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 134.03 α = 90.00
b = 136.98 β = 90.00
c = 283.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-10
  • Released Date: 2009-07-07
  • Deposition author(s): Janssen, B.J.C., Gomes, L., Koning, R.I., Svergun, D.I., Koster, A.J., Fritzinger, D.C., Vogel, C.-W., Gros, P.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4