3HL5

Crystal structure of XIAP BIR3 with CS3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 3HL5

Classification: LIGASE

Total Structure Weight: 23104.78

Macromolecule Entities
Molecule Chains Length Organism Details
Baculoviral IAP repeat-containing protein 4 A, B 95 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: BIR3, UNP residues 256-346
Gene Name(s): XIAP Gene View API3 BIRC4 IAP3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
9JZ
Query on 9JZ

A, B (3S)-1-{(2S)-2-cyclohexyl-2-[(N-methyl-L- alanyl)amino]acetyl}-3-methyl-N-(2-pyrimidin- 2-ylphenyl)-L-prolinamide
C28 H38 N6 O3
HNXBUVYVPBCESY-WJNSRDFLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
9JZ N/A in BindingDB
N/A in BindingMoad
Ki: 34000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.176
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 103.91 α = 90.00
b = 39.94 β = 100.00
c = 49.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-26
  • Released Date: 2009-06-16
  • Deposition author(s): Hymowitz, S.G.

Revision History

  • 2011-07-13
    Type: Advisory, Refinement description, Version format compliance