Download MendeleyAdditional Order Appears in the Absence of Metals in a FEN-1 protein: Structural Analysis of Magnesium Binding to Bacteriophage T4 RNaseH
Tomanicek, S.J., Devos, J.M., Mueser, T.C.To be published.
3H8J
Native T4 RNase H in the absence of divalent metal ions
- PDB DOI: https://doi.org/10.2210/pdb3H8J/pdb
- Classification: HYDROLASE
- Organism(s): Tequatrovirus T4
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-04-29 Released: 2010-05-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.213
- R-Value Work: 0.192
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribonuclease H | 305 | Tequatrovirus T4 | Mutation(s): 0 Gene Names: 33.2, das, rnh EC: 3.1.26.4 |  | |
UniProt | |||||
Find proteins for P13319 (Enterobacteria phage T4) Explore P13319 Go to UniProtKB: P13319 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13319 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| NA Query on NA | B [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.213
- R-Value Work: 0.192
- R-Value Observed: 0.193
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.257 | α = 90 |
| b = 86.458 | β = 92.04 |
| c = 57.796 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2010-05-12 Deposition Author(s): Tomanicek, S.J., Mueser, T.C.
Revision History (Full details and data files)
- Version 1.0: 2010-05-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
