3H44

Crystal Structure of Insulin Degrading Enzyme in Complex with macrophage inflammatory protein 1 alpha

Structural Biology Knowledgebase: 3H44 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3H44

Classification: Hydrolase / Cytokine

Total Structure Weight: 245369.84

Macromolecule Entities
Molecule Chains Length Organism Details
Insulin-degrading enzyme A, B 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Fragment: residues 42-1019
Mutation: C110L, E111Q, C171S, C178A, C257V, C414L, C573N, C590S, C789S, C812A, C819A, C904S, C966N, C974A
Gene Name(s): IDE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
C-C motif chemokine 3 C, D 70 Homo sapiens Fragment: residues 23-92
Gene Name(s): CCL3 Gene View G0S19-1 MIP1A SCYA3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIO
Query on DIO

A, B 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.183
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 262.74 α = 90.00
b = 262.74 β = 90.00
c = 90.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-04-17
  • Released Date: 2010-04-14
  • Deposition author(s): Ren, M., Guo, Q., Tang, W.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4