3GYZ

Crystal structure of IpgC from Shigella flexneri


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 3GYZ

Classification: CHAPERONE

Total Structure Weight: 35282.63

Macromolecule Entities
Molecule Chains Length Organism Details
Chaperone protein ipgC A, B 151 Shigella flexneri Fragment: UNP residues 1-151
Mutation: M1G
Gene Name(s): ipgC ippI CP0129
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.191
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 115.15 α = 90.00
b = 115.15 β = 90.00
c = 75.46 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-04-06
  • Released Date: 2009-06-16
  • Deposition author(s): Lunelli, M., Lokareddy, R.K., Zychlinsky, A., Kolbe, M.

Revision History

  • Version 1_0: 2009-06-16

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance