3G6Z

Design and Preparation of Potent, Non-Peptidic, Bioavailable Renin Inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 3G6Z

Classification: HYDROLASE

Total Structure Weight: 76715.14

Macromolecule Entities
Molecule Chains Length Organism Details
Renin A, B 341 Homo sapiens EC#: 3.4.23.15 IUBMB
Gene Name(s): REN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A7T
Query on A7T

A, B (1R,5S)-N-cyclopropyl-7-{4-[2-(2,6-dichloro- 4-methylphenoxy)ethoxy]phenyl}-N-(2,3-dimethylbenzyl)- 3,9-diazabicyclo[3.3.1]non-6-ene-6-carboxamide
C35 H39 Cl2 N3 O3
VKBBVOVNGWGZCA-HVIPQOSHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A7T IC50: 0.16 - 19 nM (100) BindingDB

IC50: 0.2 nM  BindingMOAD
IC50: 0.2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.195
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 67.50 α = 90.00
b = 94.75 β = 90.00
c = 119.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-09
  • Released Date: 2009-06-30
  • Deposition author(s): Bezencon, O., Bur, D., Prade, L., Weller, T., Boss, C., Fischli, W.

Revision History

  • 2011-07-13
    Type: Non-polymer description, Version format compliance