3FSN

Crystal structure of RPE65 at 2.14 angstrom resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 3FSN

Classification: ISOMERASE

Total Structure Weight: 122581.90

Macromolecule Entities
Molecule Chains Length Organism Details
Retinal pigment epithelium-specific 65 kDa protein A, B 533 Bos taurus EC#: 3.1.1.64 IUBMB
Mutation: S341L
Gene Name(s): RPE65 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Isomerases

Protein Name: RPE65 visual cycle retinoid isomerase


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A, B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A, B FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.180
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 176.52 α = 90.00
b = 176.52 β = 90.00
c = 86.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-01-11
  • Released Date: 2009-09-29
  • Deposition author(s): Kiser, P.D., Lodowski, D.T., Palczewski, K

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4