3F9M

Human pancreatic glucokinase in complex with glucose and activator showing a mobile flap


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 3F9M

Classification: TRANSFERASE

Total Structure Weight: 53525.75

Macromolecule Entities
Molecule Chains Length Organism Details
Glucokinase A 470 Homo sapiens EC#: 2.7.1.2 IUBMB
Fragment: UNP residues 12-465
Gene Name(s): GCK Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRK
Query on MRK

A 2-AMINO-4-FLUORO-5-[(1-METHYL-1H-IMIDAZOL- 2-YL)SULFANYL]-N-(1,3-THIAZOL-2-YL)BENZAMIDE
C14 H12 F N5 O S2
YUCYMQBDBXVNCE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MRK EC50: 67.11 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.70 α = 90.00
b = 81.20 β = 90.00
c = 85.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-14
  • Released Date: 2008-12-02
  • Deposition author(s): Petit, P., Gluais, L., Lagarde, A., Vuillard, L., Boutin, J.A., Ferry, G.

Revision History

  • Version 1_0: 2008-12-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2011-11-09

    Type: Database references

  • Version 1_3: 2012-04-25

    Type: Database references