3F8U

Tapasin/ERp57 heterodimer

Structural Biology Knowledgebase: 3F8U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.245

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3F8U

Classification: IMMUNE SYSTEM / ISOMERASE

Total Structure Weight: 194630.17

Macromolecule Entities
Molecule Chains Length Organism Details
Protein disulfide-isomerase A3ERp57 A, C 481 Homo sapiens EC#: 5.3.4.1 IUBMB
Mutation: C60A
Details: covalently linked to tapasin via sulfide bond
Gene Name(s): PDIA3 Gene View ERP57 ERP60 GRP58
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tapasin B, D 401 Homo sapiens Details: Asn233 glycosylated, glycan is only partly visible
Gene Name(s): TAPBP Gene View NGS17 TAPA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.245
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.10 α = 90.00
b = 72.29 β = 94.61
c = 200.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-13
  • Released Date: 2009-01-13
  • Deposition author(s): Dong, G., Reinisch, K.M.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4