3E50

Crystal structure of human insulin degrading enzyme in complex with transforming growth factor-alpha

Structural Biology Knowledgebase: 3E50 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3E50

Classification: Hydrolase / Hormone

Total Structure Weight: 240683.38

Macromolecule Entities
Molecule Chains Length Organism Details
Insulin-degrading enzyme A, B 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Fragment: UNP residues 42-1019
Mutation: E111Q
Gene Name(s): IDE Gene View
Protransforming growth factor alpha C, D 50 Homo sapiens Fragment: UNP residues 40-89, Transforming growth factor alpha chain
Gene Name(s): TGFA Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.191
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 262.17 α = 90.00
b = 262.17 β = 90.00
c = 90.52 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-08-12
  • Released Date: 2009-08-18
  • Deposition author(s): Guo, Q., Manolopoulou,M., Tang, W.-J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4