POP-OUT | CLOSE
MyPDB Login - Username: Password:

About: MyPDB stores and automatically runs your favorite queries. Email alerts are sent when matching structures are found.

    MyPDB Login
MyPDB: Login | Register
RCSB PDB Protein Data Bank | Home A Member of the wwPDB

An Information Portal to Biological Macromolecular Structures

As of Tuesday Feb 09, 2010 at 4 PM PST there are 63271 Structures RSS Feed for the Latest Released Structures Help | Latest Released  |  PDB Statistics Help | PDB Statistics
RCSB PDB Protein Data Bank | Home

Print Options: BW Safe Color Safe Print




URL:
 
 
Crystal Structure of the Yeast 20S Proteasome in Complex with Homobelactosin C
 
 
DOI:10.2210/pdb3e47/pdb
3E47
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 705406.41
     
    Molecule:Proteasome component Y7
    Polymer:1Type:polypeptide(L)Length:250
    Chains:A, O
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Molecule:Proteasome component Y13
    Polymer:2Type:polypeptide(L)Length:244
    Chains:B, P
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Fragment:UNP residues 2-245
    Molecule:Proteasome component PRE6
    Polymer:3Type:polypeptide(L)Length:241
    Chains:C, Q
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Fragment:UNP residues 3-243
    Molecule:Proteasome component PUP2
    Polymer:4Type:polypeptide(L)Length:242
    Chains:D, R
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Fragment:UNP residues 9-250
    Molecule:Proteasome component PRE5
    Polymer:5Type:polypeptide(L)Length:233
    Chains:E, S
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Molecule:Proteasome component C1
    Polymer:6Type:polypeptide(L)Length:244
    Chains:F, T
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Fragment:UNP residues 5-248
    Molecule:Proteasome component C7-alpha
    Polymer:7Type:polypeptide(L)Length:243
    Chains:G, U
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Fragment:UNP residues 10-252
    Molecule:Proteasome component PUP1
    Polymer:8Type:polypeptide(L)Length:222
    Chains:H, V
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Fragment:UNP residues 30-251
    Molecule:Proteasome component PUP3
    Polymer:9Type:polypeptide(L)Length:204
    Chains:I, W
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Molecule:Proteasome component C11
    Polymer:10Type:polypeptide(L)Length:198
    Chains:J, X
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Molecule:Proteasome component PRE2
    Polymer:11Type:polypeptide(L)Length:212
    Chains:K, Y
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Molecule:Proteasome component C5
    Polymer:12Type:polypeptide(L)Length:222
    Chains:L, Z
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Molecule:Proteasome component PRE4
    Polymer:13Type:polypeptide(L)Length:233
    Chains:1, M
    EC#:3.4.25.1 Go to IUBMB EC entry  
    Molecule:Proteasome component PRE3
    Polymer:14Type:polypeptide(L)Length:196
    Chains:2, N
    EC#:3.4.25.1 Go to IUBMB EC entry  
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 13
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
    Polymer: 14
    Scientific Name: Saccharomyces cerevisiae Go to NCBI Taxonomy entry Common Name: Baker's yeast  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1ryp  Crystal structure of the yeast 20S proteasome 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    ESY     benzyl N-[(benzyloxy)carbonyl]-L-alanyl-N~6~- [(2R,3S,4S)-3-formyl-2-hydroxy-4
    -methylhexanoyl]- L-lysinate     		C32 H43 N3 O8 3DLigand Explorer Link out to Ligand Expos:ESY Link out to SuperLigands:ESY Link out to SuperHapten:ESY
     
     
  •  
    Move Section Derived Data Hide
     
     
Reset Layout
 
< Biological Assembly    Help
Help | Display Options
Biological assembly assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Groll, M.,   Larionov, O.V.,   de Meijere, A.

    Deposition:   2008-08-10
    Release:   2008-09-02
    Last Modified (REVDAT):   2009-02-24

    Previous versions: 2FNY
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 3.00
    R-Value: 0.218 (obs.)
    R-Free: 0.245
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 135.49 α = 90.00 
    b = 301.06 β = 112.78 
    c = 144.45 γ = 90.00