3E37

Protein farnesyltransferase complexed with bisubstrate ethylenediamine scaffold inhibitor 5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 3E37

Classification: TRANSFERASE

Total Structure Weight: 94296.33

Macromolecule Entities
Molecule Chains Length Organism Details
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha A 379 Homo sapiens EC#: 2.3.1.n3 IUBMB 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Gene Name(s): FNTA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein farnesyltransferase subunit beta B 437 Homo sapiens EC#: 2.5.1.58 IUBMB
Gene Name(s): FNTB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ED5
Query on ED5

B tert-butyl 4-({(2-{(4-cyanophenyl)[(1-methyl- 1H-imidazol-5-yl)methyl]amino}ethyl)[(2-methylphenyl)sulfonyl]amino}methyl)piperidine- 1-carboxylate
C32 H42 N6 O4 S
CHEKEDNUVFBGCF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SUC
Query on SUC

B SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ED5 N/A in BindingDB
IC50: 4050 nM  BindingMOAD
IC50: 4050 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.168
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 178.39 α = 90.00
b = 178.39 β = 90.00
c = 64.51 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-08-06
  • Released Date: 2009-03-10
  • Deposition author(s): Hast, M.A., Beese, L.S.

Revision History

  • Version 1_0: 2009-03-10

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance