3DV9

Putative beta-phosphoglucomutase from Bacteroides vulgatus.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 3DV9

Classification: ISOMERASE

Total Structure Weight: 28079.50

Macromolecule Entities
Molecule Chains Length Organism Details
beta-phosphoglucomutase A 247 Bacteroides vulgatus Gene Name(s): BVU_4110
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.169
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 64.25 α = 90.00
b = 100.16 β = 97.82
c = 38.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-18
  • Released Date: 2008-08-05
  • Deposition author(s): Osipiuk, J., Tesar, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2008-08-05

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Source and taxonomy, Version format compliance