3DO7

X-ray structure of a NF-kB p52/RelB/DNA complex

Structural Biology Knowledgebase: 3DO7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3DO7

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 76541.06


Macromolecule Entities
Molecule Chains Length Organism Details
Avian reticuloendotheliosis viral (V-rel) oncogene related B A 296 Mus musculus Fragment: RHR (UNP residues 88-383)
Mutation: L142Q
Gene Name(s): Relb
Nuclear factor NF-kappa-B p100 subunit B 293 Homo sapiens Fragment: RHR (UNP residues 37-329)
Mutation: A200D
Gene Name(s): NFKB2 Gene View LYT10
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*DCP*DGP*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DC)-3' C, D, E 11 synthetic kappaB DNA


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.230
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 77.64 α = 90.00
b = 124.13 β = 90.00
c = 189.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-03
  • Released Date: 2009-07-21
  • Deposition author(s): Fusco, A., Huang, D.B., Miller, D., Vu, D., Ghosh, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4