X-ray structure of a NF-kB p52/RelB/DNA complex
DOI:10.2210/pdb3do7/pdb   NDB ID: PD1158
Primary Citation
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 76541.03
    Polymer: 1 Type: dna Length: 11
    Chains: C, D, E
    Fragment: kappa B site
    Details: kappaB DNA
    Molecule: Avian reticuloendotheliosis viral (V-rel) oncogene related B
    Polymer: 2 Type: protein Length: 296
    Chains: A
    Fragment: RHR (UNP residues 88-383)
    Mutation: GLN:142
    Organism: Mus musculus
    Gene Name: Relb
    UniProtKB: Search PDB | Q04863   Protein Feature View
    Molecule: Nuclear factor NF-kappa-B p100 subunit
    Polymer: 3 Type: protein Length: 293
    Chains: B
    Fragment: RHR (UNP residues 37-329)
    Mutation: ASP:200
    Organism: Homo sapiens
    Gene Names: LYT10 Gene View for NFKB2
    UniProtKB: Search PDB | Q00653   Protein Feature View
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD1158
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Fusco, A.,  Huang, D.B.,  Miller, D.,  Vu, D.,  Ghosh, G.

    Deposition:   2008-07-03
    Release:   2009-07-21
    Last Modified (REVDAT):   2009-08-18
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.05
    R-Value: 0.230 (obs.)
    R-Free: 0.273
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 77.64 α = 90.00 
    b = 124.13 β = 90.00 
    c = 189.59 γ = 90.00