3DCO

Drosophila NOD (3DC4) and Bovine Tubulin (1JFF) Docked into the 11-Angstrom Cryo-EM Map of Nucleotide-Free NOD Complexed to the Microtubule


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.0 Å
  • Aggregation State: Helical Array
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 3DCO

Classification: MOTOR PROTEIN

Total Structure Weight: 140682.08

Macromolecule Entities
Molecule Chains Length Organism Details
Kinesin-like protein Nod N 344 Drosophila melanogaster Fragment: Catalytic core domain (Residues 1-318)
Gene Name(s): nod NODA CG1763
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Bovine Alpha Tubulin A 451 Bos taurus Fragment: Alpha Tubulin Subunit
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Bovine Beta Tubulin B 445 Bos taurus Fragment: Beta Tubulin Subunit
Gene Name(s): TUBB2B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TA1
Query on TA1

B TAXOL
C47 H51 N O14
RCINICONZNJXQF-MZXODVADSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GTP
Query on GTP

B GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GDP
Query on GDP

B GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

N ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, N MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.0 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-04
  • Released Date: 2009-02-10
  • Deposition author(s): Sindelar, C.V., Cochran, J.C., Kull, F.J.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2016-11-09
    Type: Other