3CYM

Crystal structure of protein BAD_0989 from Bifidobacterium adolescentis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 3CYM

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 50635.24

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein BAD_0989 A 440 Bifidobacterium adolescentis Gene Name(s): BAD_0989
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.222
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.16 α = 90.00
b = 94.42 β = 90.00
c = 113.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-25
  • Released Date: 2008-05-27
  • Deposition author(s): Patskovsky, Y., Ozyurt, S., Freeman, J., Chang, S., Bain, K., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • Version 1_0: 2008-05-27

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description