3C8F

4Fe-4S-Pyruvate formate-lyase Activating Enzyme with partially disordered AdoMet

Structural Biology Knowledgebase: 3C8F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3C8F

Classification: OXIDOREDUCTASE

Total Structure Weight: 28795.42

Macromolecule Entities
Molecule Chains Length Organism Details
Pyruvate formate-lyase 1-activating enzyme A 245 Escherichia coli EC#: 1.97.1.4 IUBMB
Gene Name(s): pflA act b0902 JW0885

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

A IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MT2
Query on MT2

A [(3S)-3-amino-3-carboxypropyl](ethyl)methylsulfonium
S-ethyl-L-Methionine (Synonym)
C7 H16 N O2 S
CHUUUZMZGJUUGS-UPONEAKYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.224
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.05 α = 90.00
b = 58.05 β = 90.00
c = 117.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-02-11
  • Released Date: 2008-10-28
  • Deposition author(s): Vey, J.L., Drennan, C.L.

Revision History

  • 2014-05-14
    Type: Atom nomenclature | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4