3BQD

Doubling the Size of the Glucocorticoid Receptor Ligand Binding Pocket by Deacylcortivazol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 3BQD

Classification: PROTEIN BINDING

Total Structure Weight: 31576.74

Macromolecule Entities
Molecule Chains Length Organism Details
Glucocorticoid receptor A 255 Homo sapiens Fragment: glucocorticoid receptor ligand binding domain (residues 525-777)
Mutation: F602S
Gene Name(s): NR3C1 Gene View GRL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear receptor coactivator 1 B 13 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: nuclear receptor coactivator 1 isoform 1 coactivator motif (residues 739-751)
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAY
Query on DAY

A 1-[(1R,2R,3aS,3bS,10aR,10bS,11S,12aS)-1,11- dihydroxy-2,5,10a,12a-tetramethyl-7-phenyl- 1,2,3,3a,3b,7,10,10a,10b,11,12,12a-dodecahydrocyclopenta[5,6]naphtho[1,2- f]indazol-1-yl]-2-hydroxyethanone
4,,17 (Synonym)
C30 H36 N2 O4
FKAINCOIINXAOK-UFVJYOHBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.231
  • Space Group: P 62

Unit Cell:

Length (Å) Angle (°)
a = 93.80 α = 90.00
b = 93.80 β = 90.00
c = 130.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-20
  • Released Date: 2008-01-15
  • Deposition author(s): Xu, H.E.

Revision History

  • 2011-07-13
    Type: Version format compliance