3ZPH

Bacterial chalcone isomerase in closed conformation from Eubacterium ramulus at 2.8 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.248 
  • R-Value Observed: 0.250 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Enzymatic conversion of flavonoids using bacterial chalcone isomerase and enoate reductase.

Gall, M.Thomsen, M.Peters, C.Pavlidis, I.V.Jonczyk, P.Grunert, P.P.Beutel, S.Scheper, T.Gross, E.Backes, M.Geissler, T.Ley, J.P.Hilmer, J.M.Krammer, G.Palm, G.J.Hinrichs, W.Bornscheuer, U.T.

(2014) Angew Chem Int Ed Engl 53: 1439-1442

  • DOI: https://doi.org/10.1002/anie.201306952
  • Primary Citation of Related Structures:  
    3ZPH

  • PubMed Abstract: 

    Flavonoids are a large group of plant secondary metabolites with a variety of biological properties and are therefore of interest to many scientists, as they can lead to industrially interesting intermediates. The anaerobic gut bacterium Eubacterium ramulus can catabolize flavonoids, but until now, the pathway has not been experimentally confirmed. In the present work, a chalcone isomerase (CHI) and an enoate reductase (ERED) could be identified through whole genome sequencing and gene motif search. These two enzymes were successfully cloned and expressed in Escherichia coli in their active form, even under aerobic conditions. The catabolic pathway of E. ramulus was confirmed by biotransformations of flavanones into dihydrochalcones. The engineered E. coli strain that expresses both enzymes was used for the conversion of several flavanones, underlining the applicability of this biocatalytic cascade reaction.


  • Organizational Affiliation

    Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, Greifswald University, Felix-Hausdorff-Strasse 4, 17487 Greifswald (Germany) http://biotech.uni-greifswald.de.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CHALCONE ISOMERASE
A, B, C, D, E
A, B, C, D, E, F
282Eubacterium ramulusMutation(s): 0 
EC: 5.5.1.6
UniProt
Find proteins for U2Q8X2 (Eubacterium ramulus ATCC 29099)
Explore U2Q8X2 
Go to UniProtKB:  U2Q8X2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupU2Q8X2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.248 
  • R-Value Observed: 0.250 
  • Space Group: I 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 177.73α = 90
b = 203.12β = 90
c = 206.11γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-01-15
    Type: Initial release
  • Version 1.1: 2014-02-05
    Changes: Database references
  • Version 1.2: 2015-03-25
    Changes: Database references
  • Version 1.3: 2019-09-18
    Changes: Data collection, Database references
  • Version 1.4: 2023-12-20
    Changes: Data collection, Database references, Derived calculations, Other, Refinement description