3ZP8

HIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYME


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 3ZP8

Classification: RNA

Total Structure Weight: 20642.98

Macromolecule Entities
Molecule Chains Length Organism Details
HAMMERHEAD RIBOZYME, ENZYME STRAND A 43 Synthetic construct
HAMMERHEAD RIBOZYME, SUBSTRATE STRAND B 20 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
GDP
Query on GDP
A RNA LINKING C10 H15 N5 O11 P2 G
OMC
Query on OMC
B RNA LINKING C10 H16 N3 O8 P C

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.187
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 50.82 α = 90.00
b = 68.53 β = 112.35
c = 58.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-26
  • Released Date: 2013-03-06
  • Deposition author(s): Anderson, M., Schultz, E., Martick, M., Scott, W.G.
  • This entry supercedes: 3ZD3

Revision History

  • Version 1_0: 2013-03-06

    Type: Initial release

  • Version 1_1: 2013-06-05

    Type: Database references

  • Version 1_2: 2013-10-30

    Type: Database references