HIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYME
DOI:10.2210/pdb3zp8/pdb   NDB ID: NA2275
3ZP8

Entry 3ZP8 supersedes 3ZD3

Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 20643.10
    Molecule: HAMMERHEAD RIBOZYME, ENZYME STRAND
    Polymer: 1 Type: rna Length: 43
    Chains: A
    Organism: synthetic construct
    Molecule: HAMMERHEAD RIBOZYME, SUBSTRATE STRAND
    Polymer: 2 Type: hybrid Length: 20
    Chains: B
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3ZD4   FULL-LENGTH HAMMERHEAD RIBOZYME WITH G12A SUBSTITUTION AT THE GENERAL BASE POSITION 
    3ZD5   THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NA
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    NA Na
    SODIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    GDP
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    GDP C10 H15 N5 O11 P2 G rnaLinking
    OMC
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    OMC C10 H16 N3 O8 P C rnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2275
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Anderson, M.,  Schultz, E.,  Martick, M.,  Scott, W.G.

    Deposition:   2013-02-26
    Release:   2013-03-06
    Last Modified (REVDAT):   2013-10-30

    Previous versions:  3ZD3
     
  •   Revision History    Hide
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    2013-10-30
    Citation
    2013-06-05
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.55
    R-Value: 0.189 (obs.)
    R-Free: 0.216
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 50.82 α = 90.00 
    b = 68.53 β = 112.35 
    c = 58.90 γ = 90.00