3ZM7

CRYSTAL STRUCTURE OF THE ATPASE REGION OF Mycobacterium tuberculosis GyrB WITH AMPPCP

Structural Biology Knowledgebase: 3ZM7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZM7

Classification: ISOMERASE

Total Structure Weight: 292811.00

Macromolecule Entities
Molecule Chains Length Organism Details
DNA GYRASE SUBUNIT B A, B, C..., D, E, FA, B, C, D, E, F 442 Mycobacterium tuberculosis EC#: 5.99.1.3 IUBMB
Fragment: N-TERMINAL ATPASE REGION, RESIDUES 40-467
Gene Name(s): gyrB Rv0005 MTCY10H4.03

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACP
Query on ACP

A, B, C, D, E, F PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE (Synonym)
C11 H18 N5 O12 P3
UFZTZBNSLXELAL-IOSLPCCCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.196
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.61 α = 90.00
b = 171.92 β = 110.22
c = 109.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-05
  • Released Date: 2013-09-18
  • Deposition author(s): Agrawal, A., Roue, M., Spitzfaden, C., Petrella, S., Aubry, A., Volker, C., Mossakowska, D., Hann, M., Bax, B., Mayer, C.

Revision History

  • 2013-11-20
    Type: Citation | Details: JRNL