3ZKD

CRYSTAL STRUCTURE OF THE ATPASE REGION OF Mycobacterium tuberculosis GyrB WITH AMPPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 3ZKD

Classification: ISOMERASE

Total Structure Weight: 378693.97

Macromolecule Entities
Molecule Chains Length Organism Details
DNA GYRASE SUBUNIT B A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 432 Mycobacterium tuberculosis EC#: 5.99.1.3 IUBMB
Fragment: N-TERMINAL ATPASE REGION, RESIDUES 40-466
Details: AMPPNP IN IMINO FORM
Gene Name(s): gyrB Rv0005 MTCY10H4.03
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, D, E, F, G, H PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.182
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 71.95 α = 108.21
b = 97.85 β = 105.18
c = 138.07 γ = 91.04

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-22
  • Released Date: 2013-09-18
  • Deposition author(s): Agrawal, A., Roue, M., Spitzfaden, C., Petrella, S., Aubry, A., Volker, C., Mossakowska, D., Hann, M., Bax, B., Mayer, C.

Revision History

  • Version 1_0: 2013-09-18

    Type: Initial release

  • Version 1_1: 2013-11-20

    Type: Database references