Macromolecules
Sequence Display for 3ZKB

Classification: ISOMERASE

Total Structure Weight: 757493.31

Macromolecule Entities
Molecule Chains Length Organism Details
DNA GYRASE SUBUNIT B A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, PA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P 432 Mycobacterium tuberculosis EC#: 5.99.1.3 IUBMB
Fragment: N-TERMINAL ATPASE REGION, RESIDUES 40-466
Details: AMPPNP IN IMINO FORM
Gene Name(s): gyrB Rv0005 MTCY10H4.03
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.182
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 101.36 α = 105.28
b = 138.20 β = 92.31
c = 147.69 γ = 107.23

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-22
  • Released Date: 2013-09-18
  • Deposition author(s): Agrawal, A., Roue, M., Spitzfaden, C., Petrella, S., Aubry, A., Volker, C., Mossakowska, D., Hann, M., Bax, B., Mayer, C.

Revision History

  • 2013-11-20
    Type: Citation | Details: JRNL