3WP6

The complex structure of CDBFV E109A with xylotriose

Structural Biology Knowledgebase: 3WP6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.128

Literature

Macromolecules
Sequence Display for 3WP6

Classification: HYDROLASE

Total Structure Weight: 25402.86

Macromolecule Entities
Molecule Chains Length Organism Details
CDBFV A 228 Neocallimastix patriciarum EC#: 3.2.1.8 IUBMB
Gene Name(s): xynC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BXP
Query on BXP

A 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose
XYLOBIOSE (Synonym)
C10 H18 O9
LGQKSQQRKHFMLI-SJYYZXOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XYP
Query on XYP

A BETA-D-XYLOPYRANOSE
C5 H10 O5
SRBFZHDQGSBBOR-KKQCNMDGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.128
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 93.22 α = 90.00
b = 93.22 β = 90.00
c = 43.36 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-09
  • Released Date: 2014-03-19
  • Deposition author(s): Cheng, Y.S., Chen, C.C., Huang, C.H., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.

Revision History

No revisions since initial release