3WL4

N,N'-diacetylchitobiose deacetylase (Se-derivative) from Pyrococcus furiosus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.154

Literature

Macromolecules
Sequence Display for 3WL4

Classification: HYDROLASE

Total Structure Weight: 66938.58

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A, B 267 Pyrococcus furiosus Gene Name(s): PF0354
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAM
Query on TAM

A, B TRIS(HYDROXYETHYL)AMINOMETHANE
C7 H17 N O3
GKODZWOPPOTFGA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEZ
Query on HEZ

A, B HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HE2
Query on HE2

A, B HEXAN-1-OL
C6 H14 O
ZSIAUFGUXNUGDI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.154
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 113.89 α = 90.00
b = 113.89 β = 90.00
c = 201.03 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-07
  • Released Date: 2014-05-07
  • Deposition author(s): Nakamura, T., Niiyama, M., Hashimoto, W., Uegaki, K.

Revision History

  • 2014-08-20
    Type: Citation | Details: Citation update