3W9K

Crystal structure of thermoacidophile-specific protein STK_08120 complexed with myristic acid

Structural Biology Knowledgebase: 3W9K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W9K

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 16244.07

Macromolecule Entities
Molecule Chains Length Organism Details
FATTY ACID-BINDING PROTEIN A 139 Sulfolobus tokodaii Gene Name(s): STK_08120

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MYR
Query on MYR

A MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MYR N/A in BindingDB
Kd: 480 nM  BindingMOAD
Kd: 480 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.181
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.93 α = 90.00
b = 70.58 β = 90.00
c = 35.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-05
  • Released Date: 2013-07-17
  • Deposition author(s): Miyakawa, T., Sawano, Y., Miyazono, K., Miyauchi, Y., Hatano, K., Tanokura, M.

Revision History

No revisions since initial release