3W38

Sugar beet alpha-glucosidase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 3W38

Classification: HYDROLASE CARBOHYDRATE

Total Structure Weight: 103532.12

Macromolecule Entities
Molecule Chains Length Organism Details
Alpha-glucosidase A 913 Beta vulgaris EC#: 3.2.1.20 IUBMB
Gene Name(s): Agl
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.228
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 83.53 α = 90.00
b = 95.46 β = 90.00
c = 107.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-13
  • Released Date: 2013-05-29
  • Deposition author(s): Tagami, T., Yamashita, K., Okuyama, M., Mori, H., Yao, M., Kimura, A.

Revision History

  • Version 1_0: 2013-05-29

    Type: Initial release

  • Version 1_1: 2013-06-12

    Type: Database references

  • Version 1_2: 2013-07-17

    Type: Database references

  • Version 1_3: 2014-07-30

    Type: Other