3W0L

The crystal structure of Xenopus Glucokinase and Glucokinase Regulatory Protein complex

Structural Biology Knowledgebase: 3W0L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.242

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W0L

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 240868.10

Macromolecule Entities
Molecule Chains Length Organism Details
Glucokinase A, C 458 Xenopus laevis EC#: 2.7.1.2 IUBMB
Gene Name(s): gck gck-A
Glucokinase regulatory protein B, D 619 Xenopus laevis Mutation: H530Q
Gene Name(s): gckr

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F6R
Query on F6R

B, D FRUCTOSE -6-PHOSPHATE
C6 H13 O9 P
GSXOAOHZAIYLCY-HSUXUTPPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, C SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
F6R N/A in BindingDB
N/A in BindingMoad
Kd: 95 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.242
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 109.32 α = 90.00
b = 130.03 β = 90.00
c = 175.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-31
  • Released Date: 2013-07-17
  • Deposition author(s): Choi, J.M., Seo, M.H., Kyeong, H.H., Kim, E., Kim, H.S.

Revision History

No revisions since initial release