Crystal structure of VirB core domain (Se-Met derivative) complexed with the cis-acting site (5-BRU modifications) upstream icsb promoter
DOI:10.2210/pdb3vwb/pdb   NDB ID: NA1990
3VWB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 32357.12
    Molecule: Virulence regulon transcriptional activator virB
    Polymer: 1 Type: protein Length: 143
    Chains: A
    Fragment: UNP residues 129-250
    Organism: Shigella flexneri 2a
    Gene Names: virB invE CP0123
    UniProtKB: Protein Feature View | Search PDB | P0A247  
    Molecule: DNA (26-MER)
    Polymer: 2 Type: dna Length: 26
    Chains: C
    Molecule: DNA (26-MER)
    Polymer: 3 Type: dna Length: 26
    Chains: B
     
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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Shigella flexneri 2a   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1zx4    
    2ntz    
    3mkz    
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    BRU
    Search 
    BRU C9 H12 Br N2 O8 P DU dnaLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1990
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Gao, X.P.,  Waltersperger, S.,  Wang, M.T.,  Cui, S.

    Deposition:   2012-08-21
    Release:   2013-08-21
    Last Modified (REVDAT):   2013-12-25
     
  •   Revision History    Hide
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    2013-12-25
    Citation
    2013-12-11
    Citation
    2013-09-04
    Citation
    2013-09-04
    Entry title
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.42
    R-Value: 0.237 (obs.)
    R-Free: 0.271
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 57.32 α = 90.00 
    b = 163.05 β = 90.00 
    c = 39.57 γ = 90.00