3VUX

Crystal structure of A20 ZF7 in complex with linear ubiquitin, form II

Structural Biology Knowledgebase: 3VUX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.165

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VUX

Classification: PROTEIN BINDING / METAL BINDING PROTEIN

Total Structure Weight: 38035.91

Macromolecule Entities
Molecule Chains Length Organism Details
Polyubiquitin-C A, B, C 76 Homo sapiens Fragment: Ubiquitin
Gene Name(s): UBC Gene View
Tumor necrosis factor alpha-induced protein 3 E, F, G 35 Homo sapiens EC#: 3.4.19.12 IUBMB 6.3.2 IUBMB
Fragment: A20-type 7 Zinc finger domain, residues 757-790
Gene Name(s): TNFAIP3 Gene View OTUD7C

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
K
Query on K

E, F, G POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

E, F, G ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.165
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 62.33 α = 90.00
b = 62.33 β = 90.00
c = 85.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-09
  • Released Date: 2013-02-13
  • Deposition author(s): Nishimasu, H., Ishitani, R., Nureki, O.

Revision History

No revisions since initial release