3VSM

The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein

Structural Biology Knowledgebase: 3VSM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VSM

Classification: LYASE ACTIVATOR

Total Structure Weight: 74460.96

Macromolecule Entities
Molecule Chains Length Organism Details
Occlusion-derived virus envelope protein E66 A 659 Autographa californica multiple nucleopolyhedrovirus Fragment: UNP RESIDUES 67-704
Mutation: I249M
Gene Name(s): P79
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.172
  • Space Group: P 62
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.54 α = 90.00
b = 113.54 β = 90.00
c = 101.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-27
  • Released Date: 2013-05-22
  • Deposition author(s): Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.

Revision History

No revisions since initial release