3VNB

Structural insights into small RNA sorting and mRNA binding by Arabidopsis Ago domains

Structural Biology Knowledgebase: 3VNB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VNB

Classification: RNA BINDING PROTEIN

Total Structure Weight: 17997.93

Macromolecule Entities
Molecule Chains Length Organism Details
Protein argonaute 1 A 155 Arabidopsis thaliana Fragment: Mid domain, UNP residues 592-739
Mutation: N687AK, G688S, S689D
Gene Name(s): AGO1 Gene View At1g48410 F11A17.3 T1N15.2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.188
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.87 α = 90.00
b = 61.10 β = 90.00
c = 67.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-11
  • Released Date: 2012-10-10
  • Deposition author(s): Yuan, Y.A., Zha, X.

Revision History

No revisions since initial release