3VEK

Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P1 Crystal Form

Structural Biology Knowledgebase: 3VEK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.235

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VEK

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 52463.13


Macromolecule Entities
Molecule Chains Length Organism Details
Erythroid transcription factor C, F 119 Mus musculus Fragment: N and C Fingers, residues 200-318
Gene Name(s): Gata1 Gf-1
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3') A, D 20 synthetic
DNA (5'-D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3') B, E 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.235
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 35.19 α = 72.39
b = 62.42 β = 74.57
c = 66.05 γ = 73.63

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-09
  • Released Date: 2013-01-16
  • Deposition author(s): Jacques, D.A., Ripin, N., Wilkinson-White, L.E., Guss, J.M., Matthews, J.M.

Revision History

No revisions since initial release