3UYT

crystal structure of ck1d with PF670462 from P1 crystal form

Structural Biology Knowledgebase: 3UYT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 3UYT

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 139425.77

Macromolecule Entities
Molecule Chains Length Organism Details
Casein kinase I isoform delta A, B, C, D 296 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): CSNK1D Gene View HCKID
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0CK
Query on 0CK

A, B, C, D 4-[1-cyclohexyl-4-(4-fluorophenyl)-1H-imidazol- 5-yl]pyrimidin-2-amine
C19 H20 F N5
WUDBUIUHVNECTM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0CK IC50: 7.8 - 130 nM (97 - 100) BindingDB

N/A in BindingMoad
IC50: 14 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.244
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.15 α = 72.87
b = 85.34 β = 74.36
c = 89.14 γ = 87.26

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-06
  • Released Date: 2012-01-11
  • Deposition author(s): Huang, X.

Revision History

  • 2012-11-14
    Type: Citation | Details: Citation update