3U53

Crystal structure of human Ap4A hydrolase

Structural Biology Knowledgebase: 3U53 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3U53

Classification: Hydrolase

Total Structure Weight: 73415.25

Macromolecule Entities
Molecule Chains Length Organism Details
Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] A, B, C, D 155 Homo sapiens EC#: 3.6.1.17 IUBMB
Gene Name(s): NUDT2 Gene View APAH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.213
  • Space Group: P 43
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.49 α = 90.00
b = 72.49 β = 90.00
c = 133.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-10
  • Released Date: 2012-10-10
  • Deposition author(s): Ge, H.H., Teng, M.K.

Revision History

  • 2013-03-20
    Type: Citation | Details: Citation update