Crystal Structure of Bacillus thuringiensis PlcR in complex with the peptide PapR7 and DNA
DOI:10.2210/pdb3u3w/pdb   NDB ID: NA1322
Primary Citation
  •   Molecular Description Hide
    Classification: Transcription Activator/dna
    Structure Weight: 82906.53
    Molecule: Transcriptional activator PlcR protein
    Polymer: 1 Type: protein Length: 293
    Chains: A, B
    Organism: Bacillus thuringiensis Bt407
    Molecule: C-terminus heptapeptide from PapR protein
    Polymer: 2 Type: protein Length: 7
    Chains: P, Q
    Organism: Bacillus cereus
    Gene Names: papR BCG9842_B5480
    UniProtKB: Search PDB | B7IR02   Protein Feature View
    Molecule: 5'-D(P*CP*TP*AP*TP*GP*CP*AP*AP*TP*AP*TP*TP*TP*CP*AP*TP*AP*T)-3'
    Polymer: 3 Type: dna Length: 18
    Chains: Y
    Details: PlcR box from the 1-phosphatidylinositol phosphodiesterase promoter plcA
    Molecule: 5'-D(P*AP*TP*AP*TP*GP*AP*AP*AP*TP*AP*TP*TP*GP*CP*AP*TP*AP*G)-3'
    Polymer: 4 Type: dna Length: 18
    Chains: Z
    Details: PlcR box from the 1-phosphatidylinositol phosphodiesterase promoter plcA
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Bacillus thuringiensis   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Bacillus cereus)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA Ca
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1322
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Grenha, R.,  Slamti, L.,  Bouillaut, L.,  Lereclus, D.,  Nessler, S.

    Deposition:   2011-10-06
    Release:   2013-01-09
    Last Modified (REVDAT):   2013-03-13
  •   Revision History    Hide
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.40
    R-Value: 0.182 (obs.)
    R-Free: 0.235
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 88.88 α = 90.00 
    b = 71.09 β = 115.53 
    c = 88.85 γ = 90.00