3U2E

EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++

Structural Biology Knowledgebase: 3U2E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 3U2E

Classification: lyase / RNA

Total Structure Weight: 58929.90


Macromolecule Entities
Molecule Chains Length Organism Details
GGDEF family protein A, B 261 Caulobacter vibrioides Gene Name(s): CC_3396
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*GP*G)-3') C, D 2 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 62.14 α = 90.00
b = 75.15 β = 90.00
c = 129.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-03
  • Released Date: 2011-10-12
  • Deposition author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Massa, C., Schirmer, T., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2016-10-12
    Type: Entry title | Details: --
  • 2016-08-31
    Type: Entry title | Details: --