3U15

Structure of hDMX with Dimer Inducing Indolyl Hydantoin RO-2443

Structural Biology Knowledgebase: 3U15 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 3U15

Classification: PROTEIN BINDING

Total Structure Weight: 46547.59

Macromolecule Entities
Molecule Chains Length Organism Details
Protein Mdm4 A, B, C, D 100 Homo sapiens Fragment: unp residues 14-111
Mutation: C17S
Gene Name(s): MDM4 Gene View MDMX
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
03M
Query on 03M

A, B, C, D (5Z)-5-[(6-chloro-7-methyl-1H-indol-3-yl)methylidene]- 3-(3,4-difluorobenzyl)imidazolidine-2,4-dione
C20 H14 Cl F2 N3 O2
OEXMEVPQEPHTAQ-IDUWFGFVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
03M N/A in BindingDB
IC50: 41 nM  BindingMOAD
Kd: 78 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.184
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 73.03 α = 90.00
b = 73.03 β = 90.00
c = 68.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-29
  • Released Date: 2012-06-27
  • Deposition author(s): Lukacs, C.M., Janson, C.A., Graves, B.J.

Revision History

  • 2012-08-01
    Type: Citation | Details: Citation update
  • 2012-07-25
    Type: Citation | Details: Citation update