3SVI

Structure of the Pto-binding domain of HopPmaL generated by limited thermolysin digestion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 3SVI

Classification: SIGNALING PROTEIN

Total Structure Weight: 9938.28

Macromolecule Entities
Molecule Chains Length Organism Details
Type III effector HopAB2 A 83 Pseudomonas syringae group genomosp. 3 Fragment: sequence database residues 72-156
Gene Name(s): PMA4326_19338
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.186
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.28 α = 90.00
b = 57.28 β = 90.00
c = 55.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-12
  • Released Date: 2011-08-10
  • Deposition author(s): Singer, A.U., Stein, A., Xu, X., Cui, H., Joachimiak, A., Edwards, A.M., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2011-08-10

    Type: Initial release

  • Version 1_1: 2012-01-11

    Type: Database references

  • Version 1_2: 2012-01-25

    Type: Database references

  • Version 1_3: 2012-02-29

    Type: Structure summary