3SPU

apo NDM-1 Crystal Structure

Structural Biology Knowledgebase: 3SPU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 3SPU

Classification: HYDROLASE

Total Structure Weight: 141813.75

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-lactamase NDM-1 A, B, C, D, E 265 Klebsiella pneumoniae EC#: 3.5.2.6 IUBMB
Fragment: unp residues 27-270
Gene Name(s): blaNDM-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.216
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.54 α = 70.32
b = 73.90 β = 75.86
c = 77.41 γ = 65.30

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-03
  • Released Date: 2011-08-03
  • Deposition author(s): Strynadka, N.C.J., King, D.T.

Revision History

  • 2011-09-14
    Type: Citation | Details: Citation update