3SCQ
Crystal Structure of Rice BGlu1 E386A Mutant Complexed with alpha-Glucosyl Fluoride
- PDB DOI: https://doi.org/10.2210/pdb3SCQ/pdb
- Classification: HYDROLASE
- Organism(s): Oryza sativa Japonica Group
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2011-06-08 Released: 2012-06-13 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.206 
- R-Value Work: 0.175 
- R-Value Observed: 0.177 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-glucosidase 7 | 481 | Oryza sativa Japonica Group | Mutation(s): 1  Gene Names: BGLU1, BGLU7, LOC_Os03g49600, Os03g0703000, os3bglu7, OSJNBa0004L11.16 EC: 3.2.1.21 | ||
UniProt | |||||
Find proteins for Q75I93 (Oryza sativa subsp. japonica) Explore Q75I93  Go to UniProtKB:  Q75I93 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q75I93 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MES Query on MES | E [auth A], H [auth B] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N | |||
GLF Query on GLF | F [auth A], I [auth B] | alpha-D-glucopyranosyl fluoride C6 H11 F O5 ATMYEINZLWEOQU-DVKNGEFBSA-N | |||
SO4 Query on SO4 | D [auth A], G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.206 
- R-Value Work: 0.175 
- R-Value Observed: 0.177 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.117 | α = 90 |
b = 100.905 | β = 90 |
c = 126.828 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
REFMAC | phasing |
Entry History 
Deposition Data
- Released Date: 2012-06-13  Deposition Author(s): Pengthaisong, S., Withers, S.G., Kuaprasert, B., Ketudat Cairns, J.R.
Revision History (Full details and data files)
- Version 1.0: 2012-06-13
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary