3SC6

2.65 Angstrom resolution crystal structure of dTDP-4-dehydrorhamnose reductase (rfbD) from Bacillus anthracis str. Ames in complex with NADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 3SC6

Classification: OXIDOREDUCTASE

Total Structure Weight: 202420.33

Macromolecule Entities
Molecule Chains Length Organism Details
dTDP-4-dehydrorhamnose reductase A, B, C..., D, E, FA, B, C, D, E, F 287 Bacillus anthracis EC#: 1.1.1.133 IUBMB
Gene Name(s): rfbD spsK GBAA_1231 AB163_10460 AB164_10305 AB165_23775 AB166_26685 AB167_12540 AB168_03055 AB169_20210 AB170_18580 AB171_21300 AB893_06320 ADK18_06100 ADT20_17365 ADT21_06065 BASH2_04622 BF27_737
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B, C, D, E, F NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 79.45 α = 90.00
b = 113.34 β = 91.18
c = 144.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-07
  • Released Date: 2011-06-22
  • Deposition author(s): Halavaty, A.S., Kuhn, M., Shuvalova, L., Minasov, G., Peterson, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance