3RTJ

Crystal structure of ricin bound with dinucleotide ApG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 3RTJ

Classification: HYDROLASE / RNA

Total Structure Weight: 61161.25


Macromolecule Entities
Molecule Chains Length Organism Details
Ricin A chain A 267 Ricinus communis EC#: 3.2.2.22 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ricin B chain B 262 Ricinus communis EC#: 3.2.2.22 IUBMB
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*G)-3') D 2 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

B BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

B BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed:
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.74 α = 90.00
b = 78.49 β = 90.00
c = 114.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-03
  • Released Date: 2011-08-31
  • Deposition author(s): Monzingo, A.F., Robertus, J.D.
  • Previous versions: 1APG

Revision History

No revisions since initial release