3RRM

S. cerevisiae dbp5 l327v bound to nup159, gle1 h337r, ip6 and adp


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 3RRM

Classification: HYDROLASE

Total Structure Weight: 122595.40

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent RNA helicase DBP5 A 395 Saccharomyces cerevisiae EC#: 3.6.4.13 IUBMB
Fragment: unp residues 91-482
Mutation: L327V
Gene Name(s): DBP5 RAT8 YOR046C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin GLE1 B 297 Saccharomyces cerevisiae Fragment: unp residues 244-538
Mutation: H337R
Gene Name(s): GLE1 Gene View BRR3 RSS1 YDL207W D1049
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin NUP159 C 388 Saccharomyces cerevisiae Fragment: unp residues 2-387
Gene Name(s): NUP159 NUP158 RAT7 YIL115C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IHP
Query on IHP

B INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.228
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 186.91 α = 90.00
b = 67.98 β = 127.52
c = 132.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-29
  • Released Date: 2011-05-18
  • Deposition author(s): Montpetit, B., Thomsen, N.D., Helmke, K.J., Seeliger, M.A., Berger, J.M., Weis, K.
  • This entry supercedes: 3PEZ

Revision History

  • Version 1_0: 2011-05-18

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-11-08

    Type: Refinement description