3RM6

CDK2 in complex with inhibitor KVR-2-80

Structural Biology Knowledgebase: 3RM6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RM6

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35239.20

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 306 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
18Z
Query on 18Z

A 2-{[(2-aminopyrimidin-5-yl)methyl]amino}- 5-nitro-4-{[2-(piperazin-1-yl)ethyl]amino}benzamide
C18 H25 N9 O3
IDZSPROLKKFEMF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.220
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.95 α = 90.00
b = 72.13 β = 90.00
c = 73.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-20
  • Released Date: 2012-08-08
  • Deposition author(s): Betzi, S., Alam, R., Han, H., Becker, A., Schonbrunn, E.

Revision History

No revisions since initial release